项目作者: AndreaGuarracino

项目描述 :
Line-by-line converter from GFA to RDF (turtle)
高级语言: Rust
项目地址: git://github.com/AndreaGuarracino/rs-spodgi.git
创建时间: 2020-08-29T21:30:52Z
项目社区:https://github.com/AndreaGuarracino/rs-spodgi

开源协议:MIT License

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rs-spodgi

A(n incomplete) counterpart of spodgi implemented in Rust.

The functionality implemented is a line-by-line converter from GFA to RDF (turtle), which avoids loading the entire input graph in memory.

How to build

  1. git clone --recursive https://github.com/AndreaGuarracino/rs-spodgi
  2. cd rs-spodgi
  3. cargo build --release
  4. ./target/release/rs-spodgi -h
  1. gfa2rdf 0.1.0
  2. Andrea Guarracino
  3. GFA to RDF converter
  4. USAGE:
  5. rs-spodgi --gfa <FILE>
  6. FLAGS:
  7. -h, --help Prints help information
  8. -V, --version Prints version information
  9. OPTIONS:
  10. -g, --gfa <FILE> GFA input file to convert

How to run

  1. ./target/release/rs-spodgi -g test/t_small.gfa > t_small.ttl

docker

You can build a docker image locally using the Dockerfile:

  1. git clone --recursive https://github.com/AndreaGuarracino/rs-spodgi
  2. cd rs-spodgi
  3. docker build . --file Dockerfile --tag rs_spodgi_img

and run it with

  1. docker run --rm -it -v ${PWD}/test/:/test rs_spodgi_img rs-spodgi --gfa test/t.gfa