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项目作者： scott-rdl

项目描述 ：
This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.
高级语言： Shell
项目地址: git://github.com/scott-rdl/OTU-table-to-KRONA-pie.git
创建时间： 2018-05-24T08:12:42Z
项目社区：https://github.com/scott-rdl/OTU-table-to-KRONA-pie
开源协议：
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OTU-table-to-KRONA-pie

This bash script is used to generate a one page KRONA pie html file from a rarified multi samples OTU table.

Prerequisites :zap:

  • KronaTools have to be installed.

  • The OTU table generated by QIIME renown ‘otu_table.tsv’ has to have the following format :

    1. # Constructed from biom file
    2. #OTU ID A    B    C    D    E    F    taxonomy
    3. denovo7708    2.0    0.0    0.0    0.0    0.0    0.0    Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; uncultured bacterium
    4. denovo3059    0.0    3.0    1.0    0.0    0.0    0.0    Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; uncultured; uncultured bacterium
    5. denovo3058    0.0    13.0    0.0    15.0    30.0    0.0    Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales
    6. denovo3051    1.0    2.0    0.0    0.0    2.0    3.0    Bacteria; Proteobacteria; Gammaproteobacteria; X35; uncultured bacterium
    7. denovo3050    2.0    20.0    1.0    19.0    27.0    0.0    Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
    8. ...

    You can also specify the path to your table as a parameter.
    sh OTUtable2KRONA.sh myfile/amazing_otu_table.tsv