simple viewer for variant call format using htslib
simple GUI viewer for vcf file (variant call format) using htslib.
From Qt website :
Download Qt > 5.7 from https://www.qt.io/.
Don’t forget to check QtChart module during installation.
From ubuntu : Qt 5.7 is not yet avaible with ubuntu. But you can add PPA to your software system.
For exemple for xenial
sudo add-apt-repository ppa:beineri/opt-qt57-xenialsudo apt-get install qt57base qt57charts-no-lgplsource /opt/qt57/bin/qt57-env.shf
From fedora : Qt 5.7 is avaible
sudo dnf install qt5-qtbase-devel qt5-qtcharts-devel
From Qt Creator:
Open the CuteVcf.pro from Qt creator
Compile it and Run it
From Terminal:
Be sure you have the correct version of Qt (>5.7) by using qmake. You will find qmake in bin folder where you installed Qt. For exemple, if you installed Qt from ppa:beineri, you will find it under /opt/qt57/bin/qmake. Then launch the compilation from CuteVCF folder as follow.
git clone --recursive git@github.com:labsquare/CuteVCF.gitqmake --versionqmakemake