GraphTSNE

Blog Post | Paper

GraphTSNE: A Visualization Technique for Graph-Structured Data

International Conference on Learning Representations 2019

Workshop for Representation Learning on Graphs and Manifolds

GraphTSNE on the Cora Citation Network

Codes

The code demo_notebook.ipynb creates a visualization of the Cora citation network using GraphTSNE. The original Cora dataset and other citation networks can be found here: http://linqs.cs.umd.edu/projects/projects/lbc/.

The notebook takes roughly 3 minutes to run with GPU, or 8 minutes with CPU.

Installation

   # Install Python libraries using conda
   conda env create -f environment.yml
   conda activate graph_tsne
   python -m ipykernel install --user --name graph_tsne --display-name "graph_tsne"
   # Run the notebook
   jupyter notebook

When should I use this algorithm?

For visualizing graph-structured data such as social networks, functional brain networks and gene-regulatory networks. Concretely, graph-structured datasets contain two sources of information: graph connectivity between nodes and node features.

Cite

If you use GraphTSNE in your work, we welcome you to cite our ICLR’19 workshop paper:

@inproceedings{leow19GraphTSNE,
  title={GraphTSNE: A Visualization Technique for Graph-Structured Data},
  author={Leow, Yao Yang and Laurent, Thomas and Bresson, Xavier},
  booktitle={ICLR Workshop on Representation Learning on Graphs and Manifolds},
  year={2019}
}